Publications Please see Emile’s Google Scholar page for a complete list of publications 20 most recent publications PAQman: reference-free ensemble evaluation of long-read genome assembliesFebruary 14, 2026 A large European diversity panel reveals complex azole fungicide resistance gains of a major wheat pathogenNovember 24, 2025 Giant transposons promote strain heterogeneity in a major fungal pathogenMay 12, 2025 Population Genomics of Aspergillus sojae is Shaped by the Food EnvironmentApril 8, 2025 Pyricularia pennisetigena and Pyricularia oryzae isolates from Paraguay's wheat-growing regions and the impact on wheatMarch 19, 2025 Multivariate Divergence in Wild Microbes: No Evidence for Evolution along a Genetic Line of Least ResistanceDecember 24, 2024 Gene acquisition by giant transposons primes eukaryotes for rapid evolution via horizontal gene transferDecember 6, 2024 Geostatistical Modeling Improves Prediction of Macrophomina phaseolina Abundance and Distribution in Soybean FieldsNovember 19, 2024 PhyKIT: A Multitool for PhylogenomicsOctober 30, 2024 Starships: a new frontier for fungal biologySeptember 19, 2024 Giant transposons promote strain heterogeneity in a major fungal pathogenJuly 9, 2024 Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogenJuly 8, 2024 Systematic identification of cargo-mobilizing genetic elements reveals new dimensions of eukaryotic diversityApril 30, 2024 Endophyte genomes support greater metabolic gene cluster diversity compared with non-endophytes in TrichodermaDecember 21, 2023 Giant Starship Elements Mobilize Accessory Genes in Fungal GenomesMay 19, 2022 Giant mobile elements: Agents of multivariate phenotypic evolution in fungiMarch 15, 2022 Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes)February 14, 2022 Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestylesNovember 14, 2020 The Canadian Fungal Research Network: current challenges and future opportunitiesJuly 28, 2020 The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of FungiMay 19, 2020
